diff --git a/packages/core/src/execution-engine/__tests__/workflow-execute-process-process-run-execution-data.test.ts b/packages/core/src/execution-engine/__tests__/workflow-execute-process-process-run-execution-data.test.ts
index 4081c6ba1e4..3d40f3d2e36 100644
--- a/packages/core/src/execution-engine/__tests__/workflow-execute-process-process-run-execution-data.test.ts
+++ b/packages/core/src/execution-engine/__tests__/workflow-execute-process-process-run-execution-data.test.ts
@@ -630,4 +630,143 @@ describe('processRunExecutionData', () => {
 			expect(result.data.resultData.lastNodeExecuted).toBeUndefined();
 		});
 	});
+
+	describe('pairedItem sourceOverwrite handling', () => {
+		test('preserves sourceOverwrite from existing pairedItem object', async () => {
+			// ARRANGE
+			const node = createNodeData({ name: 'testNode', type: types.passThrough });
+			const workflow = new DirectedGraph()
+				.addNodes(node)
+				.toWorkflow({ name: '', active: false, nodeTypes, settings: { executionOrder: 'v1' } });
+
+			// Create execution data with items that have pairedItem.sourceOverwrite
+			const sourceOverwriteData = {
+				previousNode: 'CustomPreviousNode',
+				previousNodeOutput: 2,
+				previousNodeRun: 1,
+			};
+
+			const taskDataConnection = {
+				main: [
+					[
+						{
+							json: { data: 'test1' },
+							pairedItem: {
+								item: 0,
+								input: 0,
+								sourceOverwrite: sourceOverwriteData,
+							},
+						},
+						{
+							json: { data: 'test2' },
+							pairedItem: {
+								item: 1,
+								input: 0,
+								// No sourceOverwrite - should be undefined
+							},
+						},
+					],
+				],
+			};
+
+			const executionData: IRunExecutionData = {
+				startData: { startNodes: [{ name: node.name, sourceData: null }] },
+				resultData: { runData: {} },
+				executionData: {
+					contextData: {},
+					nodeExecutionStack: [{ data: taskDataConnection, node, source: null }],
+					metadata: {},
+					waitingExecution: {},
+					waitingExecutionSource: {},
+				},
+			};
+
+			const workflowExecute = new WorkflowExecute(additionalData, executionMode, executionData);
+
+			// ACT
+			const result = await workflowExecute.processRunExecutionData(workflow);
+
+			// ASSERT
+			const runData = result.data.resultData.runData;
+			expect(runData[node.name]).toHaveLength(1);
+
+			const nodeExecutionData = runData[node.name][0].data?.main?.[0];
+			expect(nodeExecutionData).toHaveLength(2);
+
+			// First item should preserve sourceOverwrite
+			expect(nodeExecutionData?.[0].pairedItem).toEqual({
+				item: 0,
+				input: undefined, // input index 0 becomes undefined
+				sourceOverwrite: sourceOverwriteData,
+			});
+
+			// Second item should have undefined sourceOverwrite
+			expect(nodeExecutionData?.[1].pairedItem).toEqual({
+				item: 1,
+				input: undefined,
+				sourceOverwrite: undefined,
+			});
+		});
+
+		test('handles non-object pairedItem gracefully', async () => {
+			// ARRANGE
+			const node = createNodeData({ name: 'testNode', type: types.passThrough });
+			const workflow = new DirectedGraph()
+				.addNodes(node)
+				.toWorkflow({ name: '', active: false, nodeTypes, settings: { executionOrder: 'v1' } });
+
+			// Create execution data with items that have non-object pairedItem
+			const taskDataConnection = {
+				main: [
+					[
+						{
+							json: { data: 'test1' },
+							pairedItem: [], // This should result in undefined sourceOverwrite
+						},
+						{
+							json: { data: 'test2' },
+							// No pairedItem at all
+						},
+					],
+				],
+			};
+
+			const executionData: IRunExecutionData = {
+				startData: { startNodes: [{ name: node.name, sourceData: null }] },
+				resultData: { runData: {} },
+				executionData: {
+					contextData: {},
+					nodeExecutionStack: [{ data: taskDataConnection, node, source: null }],
+					metadata: {},
+					waitingExecution: {},
+					waitingExecutionSource: {},
+				},
+			};
+
+			const workflowExecute = new WorkflowExecute(additionalData, executionMode, executionData);
+
+			// ACT
+			const result = await workflowExecute.processRunExecutionData(workflow);
+
+			// ASSERT
+			const runData = result.data.resultData.runData;
+			expect(runData[node.name]).toHaveLength(1);
+
+			const nodeExecutionData = runData[node.name][0].data?.main?.[0];
+			expect(nodeExecutionData).toHaveLength(2);
+
+			// Both items should have undefined sourceOverwrite since pairedItem wasn't an object
+			expect(nodeExecutionData?.[0].pairedItem).toEqual({
+				item: 0,
+				input: undefined,
+				sourceOverwrite: undefined,
+			});
+
+			expect(nodeExecutionData?.[1].pairedItem).toEqual({
+				item: 1,
+				input: undefined,
+				sourceOverwrite: undefined,
+			});
+		});
+	});
 });
diff --git a/packages/core/src/execution-engine/workflow-execute.ts b/packages/core/src/execution-engine/workflow-execute.ts
index 5c714693291..31addf68d16 100644
--- a/packages/core/src/execution-engine/workflow-execute.ts
+++ b/packages/core/src/execution-engine/workflow-execute.ts
@@ -1562,6 +1562,23 @@ export class WorkflowExecute {
 								}
 
 								return input.map((item, itemIndex) => {
+									// Preserve any existing sourceOverwrite from the pairedItem.
+									// This allows nodes like SplitInBatches to override the
+									// source information that tracks where an item originated
+									// from, which is critical for maintaining correct data
+									// lineage when nodes need to manipulate the item tracking
+									// chain.
+									if (typeof item.pairedItem === 'object' && 'sourceOverwrite' in item.pairedItem) {
+										return {
+											...item,
+											pairedItem: {
+												item: itemIndex,
+												input: inputIndex || undefined,
+												sourceOverwrite: item.pairedItem.sourceOverwrite,
+											},
+										};
+									}
+
 									return {
 										...item,
 										pairedItem: {