diff --git a/packages/@n8n/instance-ai/SPECS.md b/packages/@n8n/instance-ai/SPECS.md
index d85a1779f13..f629fe4f1f3 100644
--- a/packages/@n8n/instance-ai/SPECS.md
+++ b/packages/@n8n/instance-ai/SPECS.md
@@ -468,13 +468,15 @@ pnpm typecheck
 - [x] Rewrite workspace providers against native agents workspace interfaces.
 - [x] Replace Mastra MCP usage with native MCP or native dynamic tools.
 - [ ] Update LangSmith tracing to native telemetry/events where possible.
-- [ ] Update docs that mention Mastra runtime behavior.
+- [x] Update docs that mention Mastra runtime behavior.
 - [x] Add tests for the native runtime path.
 - [x] Verify no `@mastra/*` imports remain.
 
-Current remaining cleanup:
+Current remaining implementation gaps:
 
-- Update architecture/tooling docs that still describe the old Mastra runtime.
+- Add the destructive/fresh native persistence migration.
+- Decide whether LangSmith should move further onto native telemetry/events or
+  keep the current product-level spans.
 
 ## Acceptance Criteria
 
diff --git a/packages/@n8n/instance-ai/docs/ENGINEERING.md b/packages/@n8n/instance-ai/docs/ENGINEERING.md
index 4ad23154f78..bd87671ceeb 100644
--- a/packages/@n8n/instance-ai/docs/ENGINEERING.md
+++ b/packages/@n8n/instance-ai/docs/ENGINEERING.md
@@ -30,11 +30,11 @@ const data: ExecutionResult = parseExecutionResult(response);
 ### Zod schemas are the source of truth
 
 Every tool has an input schema (what the LLM sends) and an output schema
-(what the tool returns). Mastra uses these schemas to generate tool
+(what the tool returns). Native agents use these schemas to generate tool
 descriptions for the LLM, validate inputs at runtime, and type-check the
-execute function. If the TypeScript type and the Zod schema are defined
-separately, they drift — the LLM sees one contract, the code enforces
-another, and bugs hide until production.
+handler function. If the TypeScript type and the Zod schema are defined
+separately, they drift — the LLM sees one contract, the code enforces another,
+and bugs hide until production.
 
 ```typescript
 // NEVER — separate schema and type that can drift
@@ -118,10 +118,10 @@ it('should stream tool-call event when agent uses a tool', async () => {
 
 ### Test the contract, not the internals
 
-The clean interface boundary (ADR-002) makes each layer testable in
-isolation. Verify the contract at each boundary — not the wiring between
-them. Tools can be tested without Mastra, the reducer without SSE, adapters
-without the agent.
+The clean interface boundary (ADR-002) makes each layer testable in isolation.
+Verify the contract at each boundary — not the wiring between them. Tools can
+be tested without an agent run, the reducer without SSE, adapters without the
+agent.
 
 For each tool, test:
 - Valid input → expected output shape
@@ -203,15 +203,15 @@ When backend and frontend both switch on event types with duplicated logic,
 a change to the format requires updating both in lockstep. Extract the
 shared part into `@n8n/api-types` or a shared utility.
 
-## Mastra Patterns
+## Native Agent Tool Patterns
 
 ### Tool definitions
 
-Mastra uses Zod schemas for both runtime validation and LLM tool
-descriptions. The `.describe()` strings on schema fields become the
-parameter descriptions the LLM sees when deciding how to call a tool.
-Missing or vague descriptions lead to bad tool calls. The `outputSchema`
-lets Mastra validate return values and gives the LLM structured expectations.
+Native agents use Zod schemas for both runtime validation and LLM tool
+descriptions. The `.describe()` strings on schema fields become the parameter
+descriptions the LLM sees when deciding how to call a tool. Missing or vague
+descriptions lead to bad tool calls. The output schema validates return values
+and gives the LLM structured expectations.
 
 - Always define both `inputSchema` and `outputSchema`
 - Use `.describe()` on Zod fields — these are the LLM's parameter docs
diff --git a/packages/@n8n/instance-ai/docs/architecture.md b/packages/@n8n/instance-ai/docs/architecture.md
index 90c62f75b0c..9f95052a1f3 100644
--- a/packages/@n8n/instance-ai/docs/architecture.md
+++ b/packages/@n8n/instance-ai/docs/architecture.md
@@ -114,12 +114,13 @@ of a fixed taxonomy (Builder, Debugger, Evaluator), the orchestrator specifies:
 Sub-agents are stateless (ADR-011), get clean context windows, and publish events
 directly to the event bus (ADR-014). They cannot spawn their own sub-agents.
 
-### 3. Observational Memory
+### 3. Long-Context Compaction
 
-Mastra's observational memory compresses old messages into dense observations via
-background Observer and Reflector agents. Tool-heavy workloads (workflow
-definitions, execution results) get 5–40x compression. This prevents context
-degradation over 50+ step autonomous loops (see ADR-016).
+Instance AI uses operational compaction to summarize long builder and
+orchestrator threads. Tool-heavy workloads (workflow definitions, execution
+results) are reduced into compact summaries that keep the current task,
+verification state, and unresolved setup details available without preserving
+the full raw transcript.
 
 ### 4. Structured System Prompt
 
@@ -193,12 +194,12 @@ The agent package — framework-agnostic business logic.
 - **Workflow loop** (`workflow-loop/`) — deterministic build→verify→debug state machine for workflow builder agents
 - **Workflow builder** (`workflow-builder/`) — TypeScript SDK code parsing, validation, patching, and prompt sections
 - **Workspace** (`workspace/`) — sandbox provisioning (Daytona / local), filesystem abstraction, snapshot management
-- **Memory** (`memory/`) — title generation, memory configuration
+- **Memory** (`memory/`) — title generation and native thread/message helpers
 - **Compaction** (`compaction/`) — LLM-based message history summarization for long conversations
 - **Storage** (`storage/`) — iteration logs, task storage, planned task storage, workflow loop storage, agent tree snapshots
 - **MCP client** (`mcp/`) — manages connections to external MCP servers, schema sanitization for Anthropic compatibility
 - **Domain access** (`domain-access/`) — domain gating and access tracking for external URL approval
-- **Stream mapping** (`stream/`) — Mastra chunk → canonical event translation, HITL consumption
+- **Stream mapping** (`stream/`) — native agent `StreamChunk` → canonical event translation, HITL consumption
 - **Event bus interface** (`event-bus/`) — publishing agent events to the thread channel
 - **Tracing** (`tracing/`) — LangSmith integration for step-level observability
 - **System prompt** (`agent/`) — dynamic context-aware prompt based on instance configuration
@@ -293,21 +294,21 @@ Instance AI uses n8n's module system (`@BackendModule`). This means:
 
 ## Runtime & Streaming
 
-The agent runtime is built on Mastra's streaming primitives with added
+The agent runtime is built on native `@n8n/agents` streaming primitives with
 resumability, HITL suspension, and background task management.
 
 ### Stream Execution
 
 ```
 streamAgentRun() → agent.stream() → executeResumableStream()
-  ├─ for each chunk: mapMastraChunkToEvent() → eventBus.publish()
-  ├─ on suspension: wait for confirmation → agent.resumeStream() → loop
-  └─ return StreamRunResult {status, mastraRunId, text}
+  ├─ for each chunk: mapAgentChunkToEvent() → eventBus.publish()
+  ├─ on suspension: wait for confirmation → agent.resume('stream', ...) → loop
+  └─ return StreamRunResult {status, agentRunId, text}
 ```
 
-The `executeResumableStream()` loop consumes Mastra chunks, translates them to
-canonical `InstanceAiEvent` schema, publishes to the event bus, and handles HITL
-suspension/resume cycles. Two control modes:
+The `executeResumableStream()` loop consumes native agent chunks, translates
+them to the canonical `InstanceAiEvent` schema, publishes to the event bus, and
+handles HITL suspension/resume cycles. Two control modes:
 
 - **Manual** — returns suspension to caller (used by the orchestrator's main run)
 - **Auto** — waits for confirmation and resumes automatically (used by background sub-agents)
diff --git a/packages/@n8n/instance-ai/docs/sandboxing.md b/packages/@n8n/instance-ai/docs/sandboxing.md
index 606b9eb325a..29bb008c73f 100644
--- a/packages/@n8n/instance-ai/docs/sandboxing.md
+++ b/packages/@n8n/instance-ai/docs/sandboxing.md
@@ -6,15 +6,18 @@ Today the main consumer is the workflow builder. The agent writes TypeScript fil
 
 ## How the Pieces Fit Together
 
-There are three layers between the agent and actual code execution: a workspace abstraction from Mastra, a sandbox provider (Daytona, n8n sandbox service, or local), and the execution runtime inside the sandbox. Here is how they relate:
+There are three layers between the agent and actual code execution: the native
+agents workspace abstraction, a sandbox provider (Daytona, n8n sandbox service,
+or local), and the execution runtime inside the sandbox. Here is how they
+relate:
 
 ```mermaid
 graph TB
     subgraph Agent ["Agent Layer"]
-        LLM[LLM] --> AgentRuntime["Agent Runtime (Mastra)"]
+        LLM[LLM] --> AgentRuntime["Native Agent Runtime"]
     end
 
-    subgraph WorkspaceLayer ["Workspace Abstraction (Mastra)"]
+    subgraph WorkspaceLayer ["Native Workspace Abstraction"]
         AgentRuntime --> Workspace["Workspace"]
         Workspace --> FS["Filesystem Interface<br/>(read, write, list, edit files)"]
         Workspace --> Sandbox["Sandbox Interface<br/>(execute shell commands)"]
@@ -46,14 +49,19 @@ graph TB
 
 The agent never talks to Daytona, the n8n sandbox service, or the host filesystem directly. It only sees the Workspace, which exposes two capabilities: a filesystem (read/write/list files) and a sandbox (run shell commands). The Workspace routes those operations to whichever provider is configured.
 
-## Mastra Workspaces
+## Native Agent Workspaces
 
-Mastra is the agent framework that Instance AI uses. A Mastra **Workspace** is a pairing of two things:
+Instance AI uses the workspace abstraction from `@n8n/agents`. A native
+**Workspace** is a pairing of two things:
 
 1. **A Sandbox** — an interface for executing shell commands. It accepts a command string and returns stdout, stderr, and an exit code. Think of it as a remote terminal.
 2. **A Filesystem** — an interface for file operations: read, write, list, delete, copy, move. Think of it as a remote disk.
 
-When a Workspace is attached to an agent, Mastra automatically exposes built-in tools to the LLM: `read_file`, `write_file`, `edit_file`, `list_files`, `grep`, `execute_command`, and others. The agent uses these tools naturally in its reasoning loop — it writes a file, runs a command, reads the output, and decides what to do next.
+When a Workspace is attached to an agent, the native runtime exposes workspace
+tools to the LLM, including `workspace_read_file`, `workspace_write_file`,
+`workspace_list_files`, and `workspace_execute_command`. The agent uses these
+tools naturally in its reasoning loop — it writes a file, runs a command, reads
+the output, and decides what to do next.
 
 The key design property is that the Workspace abstraction is provider-agnostic. The agent's code and prompts are identical regardless of whether the workspace is backed by a remote container or a local directory. The provider choice is purely an infrastructure decision.
 
@@ -110,7 +118,7 @@ sequenceDiagram
     D-->>n8n: Sandbox ID
 
     n8n->>S: Write node-types catalog via filesystem API
-    n8n->>n8n: Wrap sandbox as Mastra Workspace
+    n8n->>n8n: Wrap sandbox as native Workspace
     n8n->>n8n: Inject Workspace into builder agent
 
     Note over S: Agent works inside sandbox
@@ -128,7 +136,10 @@ The process starts with a **pre-warmed image**. On first use, n8n builds a Dayto
 
 One thing that cannot be baked into the image is the **node-types catalog** (a searchable index of all available n8n nodes). It is too large for the image build API, so it is written to each sandbox after creation via the filesystem API.
 
-Once the sandbox is provisioned and the catalog is written, n8n wraps it in a Mastra Workspace and hands it to the builder agent. From that point, the agent works autonomously inside the sandbox — writing files, running the compiler, fixing errors, iterating — until it produces a valid workflow.
+Once the sandbox is provisioned and the catalog is written, n8n wraps it in a
+native Workspace and hands it to the builder agent. From that point, the agent
+works autonomously inside the sandbox — writing files, running the compiler,
+fixing errors, iterating — until it produces a valid workflow.
 
 ### What is inside a Daytona sandbox
 
@@ -143,7 +154,9 @@ Once the sandbox is provisioned and the catalog is written, n8n wraps it in a Ma
 
 ## n8n Sandbox Service: API-Backed Alternative
 
-The n8n sandbox service exposes a simple HTTP API for creating sandboxes, executing shell commands, and manipulating files. Instance AI uses it through a custom Mastra sandbox and filesystem adapter.
+The n8n sandbox service exposes a simple HTTP API for creating sandboxes,
+executing shell commands, and manipulating files. Instance AI uses it through
+native sandbox and filesystem adapters.
 
 Builder prewarming follows Daytona-like lazy image instantiation semantics:
 - the builder creates an in-memory image placeholder from setup commands
diff --git a/packages/@n8n/instance-ai/docs/streaming-protocol.md b/packages/@n8n/instance-ai/docs/streaming-protocol.md
index bdaf439a75b..270d9f1c535 100644
--- a/packages/@n8n/instance-ai/docs/streaming-protocol.md
+++ b/packages/@n8n/instance-ai/docs/streaming-protocol.md
@@ -482,9 +482,9 @@ replaying all SSE events.
 
 ### How It Works
 
-1. **Mastra V2 messages** — Mastra persists tool invocations, reasoning, and
-   text in its V2 message format. The backend parses these into rich
-   `InstanceAiMessage[]` objects with tool calls and flat agent trees.
+1. **Native agent messages** — native memory persists tool invocations,
+   reasoning, and text as `AgentDbMessage` records. The backend parses these
+   into rich `InstanceAiMessage[]` objects with tool calls and flat agent trees.
 
 2. **Agent tree snapshots** — after each `run-finish`, the backend replays
    events through `buildAgentTreeFromEvents()` and stores the resulting tree
diff --git a/packages/@n8n/instance-ai/docs/tools.md b/packages/@n8n/instance-ai/docs/tools.md
index 9cb5e9d3c2e..9325d6fb731 100644
--- a/packages/@n8n/instance-ai/docs/tools.md
+++ b/packages/@n8n/instance-ai/docs/tools.md
@@ -707,11 +707,11 @@ everything; sub-agents receive only what they need.
 
 1. Create a file in `src/tools/<domain>/` following the naming convention `<verb>-<noun>.tool.ts`
 2. Define input/output schemas with Zod (`.describe()` on fields — these are the LLM's parameter docs)
-3. Export a factory function that takes the service context and returns a Mastra tool
+3. Export a factory function that takes the service context and returns a native `Tool`
 4. Register the tool in `src/tools/index.ts` (in `createAllTools` or `createOrchestrationTools`)
 5. If the tool requires a new service method, add it to the interface in `src/types.ts`
    and implement it in the backend adapter
 6. New native domain tools are automatically available for delegation — the
    orchestrator can include them in sub-agent tool subsets via `delegate`
-7. For HITL tools, define `suspendSchema` and `resumeSchema` — Mastra handles
-   the suspension/resume lifecycle automatically
+7. For HITL tools, define native suspend/resume schemas so the agent runtime
+   handles the suspension/resume lifecycle automatically