diff --git a/drivers/pci/controller/dwc/pci-imx6.c b/drivers/pci/controller/dwc/pci-imx6.c
index 39790e66b98d..f7a2eb257c16 100644
--- a/drivers/pci/controller/dwc/pci-imx6.c
+++ b/drivers/pci/controller/dwc/pci-imx6.c
@@ -1394,12 +1394,6 @@ static int imx_pcie_host_init(struct dw_pcie_rp *pp)
 		}
 	}
 
-	ret = imx_pcie_clk_enable(imx_pcie);
-	if (ret) {
-		dev_err(dev, "unable to enable pcie clocks: %d\n", ret);
-		goto err_pwrctrl_power_off;
-	}
-
 	if (pp->bridge && imx_check_flag(imx_pcie, IMX_PCIE_FLAG_HAS_LUT)) {
 		pp->bridge->enable_device = imx_pcie_enable_device;
 		pp->bridge->disable_device = imx_pcie_disable_device;
@@ -1415,6 +1409,12 @@ static int imx_pcie_host_init(struct dw_pcie_rp *pp)
 
 	imx_pcie_configure_type(imx_pcie);
 
+	ret = imx_pcie_clk_enable(imx_pcie);
+	if (ret) {
+		dev_err(dev, "unable to enable pcie clocks: %d\n", ret);
+		goto err_pwrctrl_power_off;
+	}
+
 	if (imx_pcie->phy) {
 		ret = phy_init(imx_pcie->phy);
 		if (ret) {